DisorderUnetLM: Validating ProteinUnet for efficient protein intrinsic disorder prediction

Authors Krzysztof Kotowski, Irena Roterman, Katarzyna Stapor

Publication  https://doi.org/10.1016/j.compbiomed.2024.109586Computers in Biology and Medicine, 2025

Tags: CAID, Critical Assessment of Protein Intrinsic Disorder, Disorder Prediction

Created: Mar 17, 2025

Last update: Mar 17, 2025

DOME-id: znnn9k8683

External validation of machine learning models - registered models and adaptive sample splitting

Authors Giuseppe Gallitto, Robert Englert, Balint Kincses, Raviteja Kotikalapudi, Jialin Li, Kevin Hoffschlag, Ulrike Bingel, Tamas Spisak

Publication  https://doi.org/10.1093/gigascience/giaf036GigaScience, 2025

Tags: machine learning, predictive modelling, pre-registration, external validation, adaptive splitting

Created: Feb 14, 2025

Last update: Apr 16, 2025

DOME-id: 0p6q20kd4b

Cerebellocerebral Connectivity Predicts Body Mass Index: a New Open-Source Python-based Framework for Connectome-based Predictive Modeling

Authors Tobias Bachmann; Karsten Mueller; Simon N. A. Kusnezow; Matthias Schroeter; Paolo Piaggi; Christopher Weise

Publication  10.1093/gigascience/giaf010GigaScience, 2025

Created: Jan 10, 2025

Last update: Mar 17, 2025

DOME-id: pj6nprkh27

NanoMnT: An STR Analysis Tool for Oxford Nanopore Sequencing Data Driven by a Comprehensive Analysis of Error Profile in STR regions

Authors Gyumin Park, Hyunsu An, Han Luo, and Jihwan Park

Publication  To be updatedGigaScience, 2025

Created: Jan 20, 2025

Last update: Jan 25, 2025

DOME-id: hjnyjl40c9

Unveiling Patterns in Spatial Transcriptomics Data: A Novel Approach Utilizing Graph Attention Autoencoder and Multi-Scale Deep Subspace Clustering Network

Authors Zhou L; Peng X; Chen M; He X; Tian G; Yang J; Peng L

Publication  https://doi.org/10.1093/gigascience/giae103GigaScience, 2025

Created: Nov 4, 2024

Last update: Jan 31, 2025

DOME-id: cji1mirt7b

Healthy microbiome - moving towards functional interpretation

Authors Kinga Zielińska, Klas I. Udekwu,Witold Rudnicki, Alina Frolova, Paweł P Łabaj

Publication  10.1093/gigascience/giaf015GigaScience, 2025

Created: Jan 14, 2025

Last update: Feb 11, 2025

DOME-id: 4cstv1dfjm

Image segmentation of treated and untreated tumor spheroids by Fully Convolutional Networks

Authors Matthias Streller, Soňa Michlı́ková, Willy Ciecior, Katharina Lönnecke, Leoni A. Kunz-Schughart, Steffen Lange, Anja Voss-Böhme

Publication  https://doi.org/10.1093/gigascience/giaf027GigaScience, 2025

Created: Dec 20, 2024

Last update: Apr 16, 2025

DOME-id: 0g2i3j2hzg

High-fidelity Wheat Plant Reconstruction using 3D Gaussian Splatting and Neural Radiance Fields

Authors Lewis A G Stuart, Darren M Wells, Jonathan A Atkinson, Simon Castle-Green, Jack Walker, Michael P Pound

Publication  10.1093/gigascience/giaf022GigaScience, 2025

Created: Feb 4, 2025

Last update: Feb 17, 2025

DOME-id: swv7bfezxi

Probabilistic Annotations of Protein Sequences for Intrinsically Disordered Features

Authors Nawar Malhis

Publication  https://doi.org/10.1101/2024.12.18.629275bioRxiv, 2025

Tags: Critical Assessment of Protein Intrinsic Disorder, CAID

Created: Mar 31, 2025

Last update: Mar 31, 2025

DOME-id: 2335p2x49r

HVSeeker: A Deep Learning-based Method for Identification of Host and Viral DNA sequences

Authors Abdullatif Al-Najim, Sven Hauns, Van Dinh Tran, Rolf Backofen and Omer S. Alkhnbashi

Publication  https://doi.org/10.1093/gigascience/giaf037GigaScience, 2025

Created: Dec 17, 2024

Last update: Apr 16, 2025

DOME-id: igr5x3a1vs