About the DOME Registry

  • DOME Registry curation

    The central activity in DOME Registry is the curation of Intrinsically of machine learning methods in biology from relevant publications.
    Data collection, annotation and integration in The DOME Registry is the result of an effort of expert curators.
    Curators annotate machine learning methods through data stawardship wizard instance which is a dedicated curation interface

  • APICURON logo

    DOME registry is now a parter resource of APICURON.
    Each annotation submitted from DOME wizard and published in the DOME Registry is a recognized activity by APICURON.

  • Contact us

    Have a question or encountered an issue?
    Please don't hesitate to reach out to us at contact@dome-ml.org for assistance and support

    How to cite

    DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology.
    Omar Abdelghani Attafi, Damiano Clementel, Konstantinos Kyritsis, Emidio Capriotti, Gavin Farrell, Styliani-Christina Fragkouli, Leyla Jael Castro, András Hatos, Tom Lenaerts, Stanislav Mazurenko, Soroush Mozaffari, Franco Pradelli, Patrick Ruch, Castrense Savojardo, Paola Turina, Federico Zambelli, Damiano Piovesan, Alexander Miguel Monzon, Fotis Psomopoulos, Silvio C E Tosatto, GigaScience, Volume 13, 2024, giae094
    DOI: 10.1093/gigascience/giae094

    DOME: recommendations for supervised machine learning validation in biology.
    Walsh, I., Fishman, D., Garcia-Gasulla, D. et al. Nat Methods 18, 1122–1127 (2021).
    DOI: 10.1038/s41592-021-01205-4
    PubMed: 34316068

    DOME Registry mirroring

    DOME registry first mirroring example is available here: https://registry.dome-ml.inab.certh.gr

    For more information about the DOME Registry mirroring please check our repository here

    License

    Creative Commons Attribution 4.0 International License This work is licensed under a Creative Commons Attribution 4.0 International License.

Privacy notice

This privacy notice explains what personal data is collected by DOME Registry, for what purposes, how it is processed, and how we keep it secure.

Who controls your personal data ?

  • Data cotroller's contact detail are:

    Professor Silvio Tosatto

    University of Padua, department of Biomedocal Science

    Viale G. Colombo 3

    35131 Padua, Italy

    +39 049 827 6269

    contact@dome-ml.org

  • Data protection officer 's contact detail are:

    Director of the Department of Biomedical Sciences, University of Padua

    University of Padua, department of Biomedocal Science

    Viale G. Colombo 3

    35131 Padua, Italy

    +39 049 827 6047

    privacy@unipd.it

What is our lawful basis for processing your personal data?

Processing your personal data is necessary for our legitimate interest of allowing the day-to-day management, operation and functioning of DOME Registry.

How will your personal data be used

We will use the personal data to:

  • Provide user access to the service

  • Create anonymous usage statistics

Who will have access to your personal data?

The personal data will be disclosed to authorized DOME registry staff.

Will your personal data be transferred to third countries (i.e. countries not part of EU/EAA) and/or international organisations?

Personal data is transferred to the following service provider based in a third country which the DOME Registry relies on to provide the service:

  • Google Analytics

There are no personal data transfers to international organisations.

How long do we keep your personal data?

Any personal data directly obtained from you will be retained as long as the service is live, even if you stop using the service.

We will keep the personal data for the minimum amount of time possible to ensure legal compliance and to facilitate internal and external audits if they arise.

Access to the web and security logs containing personal data are restricted to relevant DOME Registry staff.

Your rights regarding your personal data

You have the right to

  1. Not be subject to decisions based solely on an automated processing of data (i.e. without human intervention) without you having your views taken into consideration.
  2. Request at reasonable intervals and without excessive delay or expense, information about the personal data processed about you. Under your request we will inform you in writing about,
    for example, the origin of the personal data or the preservation period.
  3. Request information to understand data processing activities when the results of these activities are applied to you.
  4. Object at any time to the processing of your personal data unless we can demonstrate that we have legitimate reasons to process your personal data.
  5. Request free of charge and without excessive delay rectification or erasure of your personal data. It must be clarified that rights 4 and 5 are only available whenever the processing of your personal data is not necessary to:
    • Comply with a legal obligation.
    • Perform a task carried out in the public interest.
    • Exercise authority as a data controller.
    • Archive for purposes in the public interest, or for historical research purposes, or for statistical purposes.
    • Establish, exercise or defend legal claims.